rs52624917 SNP Detail

Summary

• ID
  rs52624917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11504036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTTGGAT CTTTGGGTTA
  GAAAAACCTG TACCCTTCAC AGGTCTCTCT GTGCTCTGAC TCAAACTTCC TGATGCGCAC
  ACCTCTTGTA CCAAGTGGAG AAGCATATTT TGATCCCAGC ATATCTGTTG TTCCCTCAAG
  GAAATTCACC ACCAGACTGT GTTGTTTGTA CTTTCTGTGA ACGCTTCTCA ATCTATCTCT
  R
  CCATCTCTGT TATCTATCTC TTCATCATCT AACATCTCTT ATGTTTTCTC TGTTCTCTAT
  CATCTCTATA TCTAGTATTG TTCATCTATT GTTATTTCTC TAGCATCTTC ATCTTTCTCT
  CTCTATCACC TCTAGCTCTG TCCACCATCT CTGTCTCTGT CATCTCTACA TCTAGTCATC
  TCCATCTCTG CCATCAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52615896	NES15504995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	A		A	G	G		G
ss324264595	CHEV_13_11581417	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52624917					SNP	G	G	G	A	G	G	G	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615896	NES15504995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11504036 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	1033 bp distal
Rr387978	regulatory region 387978	635 bp upstream