rs52624975 SNP Detail

Summary

• ID
  rs52624975
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGAGAGGG GAGGGGATAG AGGAGGGAGT AAAGCAGGGA
  GGAGGGGTAC CAGGAGGAGG AGGAGGATAA GGGAGGAGTG GCAGGGAGAG GAGATGAAGC
  M
  GACTCATGGT AAGTACTGGG CATCCTTCAC GCCTATGACC CAGCAGGAAG GTGTTTTGTC
  CACCTACATG AGAACTTGGG GTAGAGACAA GGCCAGGACA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52651859	NES15471996	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52624975					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651859	NES15471996	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990057 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	127 bp upstream
Cpgi5821	CpG island 5821	98 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1783 bp distal
Rr482299	regulatory region 482299	1478 bp distal
Rr482300	regulatory region 482300	1551 bp distal
Rr482301	regulatory region 482301	1278 bp distal
Rr482302	regulatory region 482302	1228 bp distal
Rr482303	regulatory region 482303	195 bp distal
Rr482304	regulatory region 482304	within coordinates
Tssr123158	transcription start site region 123158	222 bp upstream
Tssr123159	transcription start site region 123159	184 bp upstream
Tssr123160	transcription start site region 123160	155 bp upstream
Tssr123161	transcription start site region 123161	128 bp upstream