rs52625776 SNP Detail

Summary

• ID
  rs52625776
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161323387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAGTGTTCT CTCATACAGA ACAGCCAGGG CTGCAGAGAG
  AGAGAGAGAG AAAAAAAAAC AGCAAAAACC AAACCAAAAC AAACAGACAA AAAAAAAAAA
  M
  AACAACAAAA CAAAACAAAA CAAAAAAAAC CAAAAAAAGC ATTGACCAGA AAAGCCAGAA
  AGGAATCAAA TATTAAATAA GACATTATAT AATTCAAGGG T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145915234	ENSMUSSNP5928186	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52625776					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161323387 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	within coordinates
Tssr9690	transcription start site region 9690	1162 bp downstream