rs52627743 SNP Detail

Summary

• ID
  rs52627743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136074147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taagtgtgt acatgtattg ttgtataagt
  gtgcatgagt atgcatgagt gtatatgagt gtttgtgagt gcatgtgtgt atatatatat
  atgtgtatat atatatatac atacatatat atatatatat acatatacac acatatacat
  R
  tatattggat atacgtgagt atgtgtgGTT CTTGCTGTCT GTATATCGTT GAGCTTGTCG
  CTGTTTTCTT CCCTTTGCCA TTCTGTTGCC ATGGAGAACT TCCATGCTAG CAAGTCCAGG
  CCAAAGAGTG CACCACAGGG GCTTAACTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145553484	ENSMUSSNP1052309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319994872	CHEV_1_138042986	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52627743					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136074147 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1747 bp distal
Rr30732	regulatory region 30732	within coordinates
Tssr9046	transcription start site region 9046	1174 bp downstream
Tssr9047	transcription start site region 9047	140 bp upstream
Tssr9048	transcription start site region 9048	243 bp upstream