rs52628283 SNP Detail

Summary

• ID
  rs52628283
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10950025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG GAGGCAGAGG CAGGCCTGGT
  C
  TACAAAGTGA GTTCCAGGAC AGCCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148579107	ENSMUSSNP2137513	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52628283					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10950025 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	486 bp upstream
Rr11561	regulatory region 11561	176 bp proximal
Rr29991	regulatory region 29991	1225 bp distal
Rr370844	regulatory region 370844	536 bp downstream
Tssr5931	transcription start site region 5931	1186 bp downstream
Tssr5932	transcription start site region 5932	484 bp upstream