rs52628481 SNP Detail

Summary

• ID
  rs52628481
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:123033817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATGGTT GTATATGCCT
  AAAGTTAGAC TCGATAATAC AAGCTGCATT TGAAGGCAAC AATTACAAAC GGGGAAATTG
  AGCCTCTTAA AAATCAAATG CCAAGGTCAC ACGGCAACTG GAAGTGCAAG GTTATCGCAC
  AGATTTCAAA TCCCCAGTAC TCAGTACCTC CATGAAAGGC TGAATTAAGA TACAAACTCC
  K
  TAAAAGCTGC AACTAAGTTC TCTTTATAAT TTGGCGTGTG AGTGTGCGTG TGTGTGCGTG
  TGTGTGCGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCACT GCGGTTTAAT
  GGTCTAGTAC CATTCTACAC CATTTGAGGC AAACGTTTCA AAATTAACTA AGGCAAAACT
  GCTGTTTCTA AGAATGAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52240099	NES15346982	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	G	G	G	G	G	G	T	G	G	G
ss147657965	ENSMUSSNP482793	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52628481					SNP	G	G	T	G	T	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52240099	NES15346982	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:123033817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2311	CpG island 2311	305 bp distal
Gm4129	predicted gene 4129	within coordinates
Gm55025	predicted gene, 55025	941 bp upstream
Tssr99665	transcription start site region 99665	1444 bp upstream
Tssr99666	transcription start site region 99666	951 bp upstream
Tssr99667	transcription start site region 99667	937 bp upstream
Tssr99668	transcription start site region 99668	925 bp upstream
Usp15	ubiquitin specific peptidase 15	917 bp upstream