rs52630747 SNP Detail

Summary

• ID
  rs52630747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:6805735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTAGACA GTACTAAAGG
  ATGATAATTG ATACTGCCTT CTGCTTCCCT TATACATATA CATGCATCTG CACATACCTG
  TACACATGTG TATATGTACA CACATTGAGA GAGAGAAAGA GGGGTGGGAG AACCAAGAAG
  GAGATGGAAG GAGGGAGGGA GAGATGGAAG GAGGGAGGGG GAGATGGAAG AAGAGAGGAC
  R
  GAAGATAAAG AAATCCTACT TGAGCTAAAG GAAAGATATA TGTGAGGTCA GTTTGGGAGA
  ATGAGGAAGA AGATGATTGA CAAATCTGTG TCCATATTTT AAAAAGAGAC AAAAGGAGAC
  AGAGAAGGGA AGAAAGGCGT GTACATCCTA CATTGTCTGT GAGGTAGCTA AGCTAAGCAG
  GCAGATGGAG GCCGCTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52588465	NES15680145	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52630747					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52588465	NES15680145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:6805735 () rs orientation: forward

Symbol	Name	Function Class
Rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	within coordinates
Rr511178	regulatory region 511178	1385 bp distal
Tssr136955	transcription start site region 136955	1163 bp downstream