rs52631338 SNP Detail

Summary

• ID
  rs52631338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805326 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C TTCTTTTTAT TGGGTATTTA TTTCATTTAC ATCTCCAATG
  CTATCCCAAA AGTCCCCCAC ACGATCCCCC ACCCACCCAT TCCCACTTCT TGGCCCTGGC
  R
  TTCCCCTGTA CTGAGGCATA TAAAGTTTGC ACAACTAATG GGCCTCTCTT TCCACTGAGG
  GCCAACTAGG CCATTTTTTG ATTCATATGC AGCTAGAGAC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132025992	ENSMUSSNP3084288	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52631338					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805326 () rs orientation: reverse

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1522 bp upstream