rs52632720 SNP Detail

Summary

• ID
  rs52632720
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTA CAAAGTGAGT TCCAGGACAG
  C
  CAGGGCTACA CAGAGAAACC CTGCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149013917	ENSMUSSNP6550745	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52632720					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	355 bp distal
Rr403780	regulatory region 403780	331 bp downstream
Rr480032	regulatory region 480032	47 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	569 bp upstream
Tssr122583	transcription start site region 122583	561 bp upstream