rs52633792 SNP Detail

Summary

• ID
  rs52633792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGCTGGA AGGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA ACGAACCCAG AGGAACTAGG TACCAAGAAG CCCAGTCCTC
  Y
  GTTGACCTGG AAGTAGAGAA AGGCTGCCAA GACAGCAATG TTCTGCAGCA TGTTGGGTGC
  ACAGTGGATA AAGCTCTTGA CACTCCCTAT CTCTTTGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss52145443	NES15237015	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs52633792					SNP	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145443	NES15237015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430608 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1379 bp distal
Pex3	peroxisomal biogenesis factor 3	1722 bp upstream
Rr368928	regulatory region 368928	1553 bp downstream
Rr427803	regulatory region 427803	1960 bp distal
Rr427804	regulatory region 427804	1755 bp distal
Rr427805	regulatory region 427805	1232 bp distal
Rr427806	regulatory region 427806	248 bp distal
Tssr92399	transcription start site region 92399	1625 bp downstream
Tssr92400	transcription start site region 92400	1606 bp downstream
Tssr96771	transcription start site region 96771	1994 bp upstream
Tssr96772	transcription start site region 96772	1803 bp upstream
Tssr96773	transcription start site region 96773	1779 bp upstream
Tssr96774	transcription start site region 96774	1738 bp upstream
Tssr96775	transcription start site region 96775	1711 bp upstream
Tssr96776	transcription start site region 96776	1698 bp upstream