rs52634440 SNP Detail

Summary

• ID
  rs52634440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85150250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTTCCC CAGCGCCCTC
  ATAAATGCCG GGTGGGGGTG GTGGCAGGGT TCGAGAGGCA GAGACTGGAT CCCTGAAGCA
  AGCTGGCTAG CTAGACCAAT CAAATCAGTT ATGTTACATA CAGTGGATAA CAACCCGGGA
  AAACAGTCAA CATCAACCTA TGGCTTCCAC ATGCACACGA ACCCACACAC AAACATGTAC
  Y
  TACATGCAAA CATGCATACA CACATGCACA CACACTGTAC AGTTAAACAC ACACGCCTGC
  GTAAGTCAAA ACGGAACTTT AAAGTGTTTT TAGTGTAAGT GAATGATTTT ATGCATACAG
  AGTTAAAAGA AAATTACAGT GATTTCTATG AATGTATGTC AAAGATGGCC ATCCCATATT
  AATTTAAAGC AGGGGAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52449556	NES15419799	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52634440					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52449556	NES15419799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85150250 () rs orientation: forward

Symbol	Name	Function Class
Gm38355	predicted gene, 38355	1129 bp upstream
Prox2	prospero homeobox 2	within coordinates
Rr264587	regulatory region 264587	47 bp distal
Rr268707	regulatory region 268707	1851 bp distal
Rr269802	regulatory region 269802	1311 bp distal