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rs52634440 SNP Detail
Summary
  • ID
    rs52634440
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:85150250 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCATTTCCC CAGCGCCCTC
    ATAAATGCCG GGTGGGGGTG GTGGCAGGGT TCGAGAGGCA GAGACTGGAT CCCTGAAGCA
    AGCTGGCTAG CTAGACCAAT CAAATCAGTT ATGTTACATA CAGTGGATAA CAACCCGGGA
    AAACAGTCAA CATCAACCTA TGGCTTCCAC ATGCACACGA ACCCACACAC AAACATGTAC
    Y
    TACATGCAAA CATGCATACA CACATGCACA CACACTGTAC AGTTAAACAC ACACGCCTGC
    GTAAGTCAAA ACGGAACTTT AAAGTGTTTT TAGTGTAAGT GAATGATTTT ATGCATACAG
    AGTTAAAAGA AAATTACAGT GATTTCTATG AATGTATGTC AAAGATGGCC ATCCCATATT
    AATTTAAAGC AGGGGAATGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52449556 NES15419799 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs52634440 SNP T T T T T T C T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52449556 NES15419799 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:85150250 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm38355 predicted gene, 38355 1129 bp upstream
Prox2 prospero homeobox 2 within coordinates
Rr264587 regulatory region 264587 47 bp distal
Rr268707 regulatory region 268707 1851 bp distal
Rr269802 regulatory region 269802 1311 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory