rs52635835 SNP Detail

Summary

• ID
  rs52635835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163187227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAATGTTA CCTAGCATAT GTATAATCTA CAAAGTATTC
  ACACACACAC ACACACACAC ACACACACAC ACGCATACAC ACGCATGCAC GGACACACAC
  R
  CACTAAGAGA ACAAGGGGAC TTGTGCCAGC AAAATGAACT TCTTCAACAA GAAGATTGGG
  TATGACAAGT CTGTCTCTGT GGGTCTGCAG TTTATGAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145957050	ENSMUSSNP6260789	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52635835					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163187227 () rs orientation: forward

Symbol	Name	Function Class
Rr696	regulatory region 696	1296 bp proximal
Rr846	regulatory region 846	within coordinates
Rr407134	regulatory region 407134	1781 bp proximal
Rr422080	regulatory region 422080	1129 bp distal
Rr422081	regulatory region 422081	1682 bp proximal
Tssr9725	transcription start site region 9725	1271 bp downstream