rs52635887 SNP Detail

Summary

• ID
  rs52635887
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79661372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCAGCA CTTGGGAGGC
  AGAGGCAGGC AGATCTCTGA GTTCGAGGCC AGCCTGGTCT ACAGAATGAG TTCCAGGACA
  GCCAGGGCTA CACAGAGAAA CCCTGTCTCG AAAAACCAAA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA CCAAAAAAAA AAACAGAAGT TTGTTGTGTG ATCTGCAGTC AGGTATAGTT
  K
  GATCCAGGAG CTTTGATGTT TTTGGAAGAT TCCATGTTGG GTTTGGGATT GATGTCAAGA
  AGCCTTGCTT GTCCCCAGGG CTCCTGCAGC TCCTGCAGCC CCCTGACAAT GTCCCTGTCC
  CCAGGTGGCC TGACACGGTC TCTTTCTCCT CCTTAAGTGA GCCTGGAGGC CTCCAACCCA
  CAGAAGGAAG GTCACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386546	NES15268615	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52635887					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386546	NES15268615	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79661372 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	429 bp proximal
Rr225117	regulatory region 225117	971 bp distal
Rr228949	regulatory region 228949	1229 bp proximal
Tssr94404	transcription start site region 94404	920 bp downstream
Tssr94405	transcription start site region 94405	843 bp downstream
Tssr94406	transcription start site region 94406	818 bp downstream
Tssr94407	transcription start site region 94407	468 bp upstream
Tssr94408	transcription start site region 94408	580 bp upstream
Tssr94409	transcription start site region 94409	776 bp upstream