rs52636092 SNP Detail

Summary

• ID
  rs52636092
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8857335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATATAG ATAAACACAC
  ACTTATACAC ACATACACAA ACATATACAT GCATATACAC AATACATATA AACACACATC
  CACATCCACA AACACACACA CGTACACATA TACACAAACA CACACACTTC CACACATACA
  TATGTACCTA TAATAATAAA CAATAATAAA TAAAAAATGC CAAAAATTAA AATCACATTC
  K
  TATAGACTAT TGGTAACTCA AGTCCAACTG TAGACTTGAG CAAAATGTTG GAGAGAAAGT
  TGGGTGGTTA AAAGTTATGC TGCTCTTGCA GATGACCTGA GTTTGGTTCC CAGCACCCAC
  ATCAGGTAAC TCACAACCAT AATAACTTCA GCTCCAGGGG ATCCTCTTCT GGACTGCACA
  GACCAACACA CATACATGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52141024	NES15241433	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	G	G	G	G		G	G	G	G		G
ss323246146	CHEV_10_8701389	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52636092					SNP	G	T	T	T	G	G	G	G	G	T	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141024	NES15241433	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8857335 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	1266 bp proximal
Rr223852	regulatory region 223852	1743 bp proximal