rs52636520 SNP Detail

Summary

• ID
  rs52636520
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24024221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA CCCAACAGAA CTTGTTATTT
  W
  AAAAAAAAAA TTGAATGAGA GAGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148809503	ENSMUSSNP7149011	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324292300	CHEV_13_23932107	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52636520					SNP	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24024221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56568	predicted gene, 56568			1839 bp downstream
Rr475960	regulatory region 475960			779 bp distal
Rr475961	regulatory region 475961			696 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3			Intron
				Noncoding-Transcript-Variant
Tssr4011	transcription start site region 4011			610 bp downstream
Tssr4012	transcription start site region 4012			506 bp downstream
Tssr118875	transcription start site region 118875			796 bp downstream
Tssr118876	transcription start site region 118876			768 bp downstream
Tssr118877	transcription start site region 118877			651 bp downstream
Tssr118878	transcription start site region 118878			618 bp downstream