rs52638454 SNP Detail

Summary

• ID
  rs52638454
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113395914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCAGGAGCT GAAGGAAAAG TCATGGAGGA ATGCTGCTTA
  TTTGGCTTGC TCTCTCTGGC TTGCTCAGCT ACGTTTCTTT TTCCCCTTAT CTATCTATCT
  T
  TCTATCTGTC TGTCTGTCTG TCTGTCTGTC TGTCTGTCTG TCTGTCTGTC TATCTGTCTA
  TCTAATCTAT CCATTCATTT GTTCACTTAA CATCATTCCA G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss138742492	ENSMUSSNP4508762	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52638454					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113395914 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1756 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Tssr118018	transcription start site region 118018	1909 bp upstream
Tssr118019	transcription start site region 118019	1853 bp upstream
Tssr118020	transcription start site region 118020	1808 bp upstream
Tssr118021	transcription start site region 118021	1691 bp upstream
Tssr118022	transcription start site region 118022	1662 bp upstream
Tssr118023	transcription start site region 118023	1499 bp upstream