rs52639321 SNP Detail

Summary

• ID
  rs52639321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185152203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTCTCTAG TTGCAGGCAG AGTACAGGTT
  CACTAGGAAT GAGTCTGGGG TGTACCAGTG ACTAACCCCT CAGTGTCCGA GGTGTGTCTG
  GTTTCAAGGT GTCTCTGTCA TTCCGTGTAc catgtgccat tccatgtgcc attccatgtg
  Y
  cattccGTGT ACCATGTGCC ATTGGTGAGG AAATGGGATT CAGAGTAGAT GAAGCCATGA
  TATAGTCTGC ATGCAACTTG AGATACACAT GCACTTTTAA CTGCCTGTTT TGTTTTACAG
  GGAGTTCCAG TCAGACTTGA GGTGGGGCCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146431876	ENSMUSSNP5584265	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320175602	CHEV_1_187243885	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52639321					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185152203 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	1784 bp distal
Rr425383	regulatory region 425383	873 bp proximal
Tssr10610	transcription start site region 10610	1712 bp downstream