rs52640046 SNP Detail

Summary

• ID
  rs52640046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138906323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT ATATACATAT ATAATTTTTT
  W
  AGATTTATTT ATTTATTATA TGTAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145584882	ENSMUSSNP6962571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss320001820	CHEV_1_140875162	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52640046					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138906323 () rs orientation: forward

Symbol	Name	Function Class
4930596I21Rik	RIKEN cDNA 4930596I21 gene	within coordinates
Dennd1b	DENN domain containing 1B	within coordinates
Gm71084	predicted gene, 71084	within coordinates