rs52640121 SNP Detail

Summary

• ID
  rs52640121
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4547885 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT GAGACAGGGT
  TTCTCTGTAT AGCTCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCGAACT
  CAGAAATCCG CCTGCCTCTG CCTCCCGAGT GCTGGGATTA AAGGCGTGCG CCACCATGCC
  CGGCCCCCAA ACTATTCTTA ATGTATAATG ACAAATTATA CTACAAAGTT ATGAGCTATA
  W
  CAGGAAGCAC CTTGTGGTTT TGTTCTGTTT TGTTTTGTTT TTAATAAGTG GAAAACAGTG
  GTATTCTAAG AATTTTTTTA AATCCTATAG GCTTTTTCAA ATCACTAGAA CATTAGAATC
  ATTGGTACGC TTATCCTAGA GTCATAACAT TCATATTTTC CTCTCGTTCT ACTTCAAATA
  CCCAATGGTG GTAATAAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52131284	NES15248518	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52640121					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52131284	NES15248518	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4547885 () rs orientation: reverse

Symbol	Name	Function Class
Rr215037	regulatory region 215037	316 bp proximal
Rr222800	regulatory region 222800	1672 bp proximal
Rr227786	regulatory region 227786	432 bp proximal