rs52640490 SNP Detail

Summary

• ID
  rs52640490
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86142404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGACTCT CTCATGCTGC
  CCCCCACCCT GTGTGTGTGT GTGTGTGTGT ATTTATCTTG TGGGTGGGGG CAGTGGCACT
  GGTGTCACAG CATGCATGTA GAATCAGAGG ATAACCTGTA GGAAGCAGGT CTCTCCTACC
  GTATGGATCC TGGACCTCAA ACTCAATCAA GTCTTCAGGT TCTGTAGTGT CTAACTCACT
  S
  AGCCATTTTG CTGAGCCATA TATGTATATA CATATATCAT ATGCAAGTAT ATGAGTATAT
  GAGATATTTT AATATATATT TCTAAGTAGA ATTTTATCCA TTCATCTTAC ATTTAATATG
  TACTTTCCAA TACAAAAACT ATCAAGCTAA CATATTCTAG CTGAGAACCA CACACTTAGA
  CAGTGATGAG GCTGTGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450479	NES15424488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52640490					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450479	NES15424488	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86142404 () rs orientation: forward

Symbol	Name	Function Class
Ift43	intraflagellar transport 43	within coordinates
Rr258280	regulatory region 258280	597 bp proximal
Rr268782	regulatory region 268782	1598 bp proximal
Rr269813	regulatory region 269813	50 bp proximal