rs52641071 SNP Detail

Summary

• ID
  rs52641071
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156605429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTCAAA ATTCACAGCC CTACCCCGAC
  ACGATCTGGA AAGGGGGGAT AAGGATGTAT Catatatcat ataaatatat atatatatat
  atatatatat atatatatat atatatatat atacatatat atatatatat gtatGGAGTC
  K
  GGGGGGGGGT CATCGTTAAG TCAGACTGAG TGGAAGGATT ACATGAGAAT GGTCAACAGA
  TGAACCAGGG AGGGATCCCT TTTCCTGCTA TTTGACCGAA GACATGCTTG ATCAGCAGAG
  ACAAGAGCCA CAGGTTTAGT CATTGCCTTA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145804835	ENSMUSSNP7087552	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320072741	CHEV_1_158707990	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52641071					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156605429 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421253	regulatory region 421253	1475 bp distal
Rr421254	regulatory region 421254	60 bp proximal
Rr421255	regulatory region 421255	1056 bp proximal