rs52641301 SNP Detail

Summary

• ID
  rs52641301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136146249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CGTTCATGTG CCTTCATCTT ACTTCATATG TCACACCTGA
  CAAGGGCTTC CTTAAGGAAG GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG
  R
  AAGGAAGAAA GGAAGGAAGG TTGGTTTTGC TTCGGTTCAC AGTCTAAGGT GCAGTCTAAG
  GTGCGGTCCA TTATGTAGGA AGGCTTGGAG GCAGGAGGAC G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145554223	ENSMUSSNP1602013	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52641301					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136146249 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1873 bp downstream