rs52642464 SNP Detail

Summary

• ID
  rs52642464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105050080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAGGT ATAGAGGGAG
  GGAAAGAAGG GGAGAGAAGG AAAGTTGAAA TGAGAAGAAA GAGGAGGAGC AGAAAGATGA
  AGAGAGGGAA GGGAGGGGAG GAAAGGAGGG AGAGATAGGG GTAACAGAGA AAAGGAAGGG
  GAAAGAAGGG GTGGGGAAGG GGGTGCATAT ATGTGTAAGT CTGTAGTGGT GTTCCAAATG
  Y
  ATAGAGTCAG TACTTGATTT GCTTTTTGCT GTTATCCAAC AAGAGTATTA ATCAACTGTT
  TCTATCAGAG TAGGAAACCA GGCCAAAACA AGGCAAAGCA GGCTGAGCTG CTCTTAATCA
  CTTTCTCATG GTATTAGATT GTAAAGTTGT AGAATAGCAT TACATTTCCT TTCCAAATGA
  GGCATGGATC TACTTAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52689546	NES15529116	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52642464					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52689546	NES15529116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105050080 () rs orientation: forward

Symbol	Name	Function Class
Gm41048	predicted gene, 41048	1183 bp upstream
Gm60378	predicted gene, 60378	within coordinates
Rr389010	regulatory region 389010	752 bp downstream