rs52642810 SNP Detail

Summary

• ID
  rs52642810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162162577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTTGTTTTC CAGCTTGCAG CTGCTTCCCA GTCTGGCCTA
  GCTCGCGCGC GCACACACAC ACACACACAC ACACACACAC ACACGCACAC ACACGCACAT
  R
  CACACGCACA CACACACACA CACTGAGGCT GTTAGCACCC TAGTTCTCCT CACTACCCTT
  AGCTGCACCA GGCAGAGCTG GTATATATGC AGAAAACGTG T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145934712	ENSMUSSNP1203681	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52642810					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162162577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnm3	dynamin 3			Intron
				Noncoding-Transcript-Variant
Rr421955	regulatory region 421955			13 bp distal
Rr421956	regulatory region 421956			1367 bp proximal
Rr421957	regulatory region 421957			1563 bp proximal
Rr421958	regulatory region 421958			1807 bp proximal