rs52644240 SNP Detail

Summary

• ID
  rs52644240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185151685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAC TGCTCAACAT ACACACACTC
  W
  CACACACACA CACACACTAT CTATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146431875	ENSMUSSNP788184	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52644240					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185151685 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	1266 bp distal
Rr425383	regulatory region 425383	1391 bp proximal
Tssr10610	transcription start site region 10610	1194 bp downstream