rs52645806 SNP Detail

Summary

• ID
  rs52645806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117642614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTTTGT TATGCATCAG
  TCGTAAATTG TTCAATTATT CTTCCTATTG ATAGGCACAC AGTGCCAATG TTTAATCAGC
  TTGGTATATA ACCTTTTCTC TTTAGGTACA GACATTAGGG TCACCTGGTT AAACAGGTGT
  AGTTTGAATT TTAATAAATA TTTGCAGATA GTTCCCGATT TTTGGCTTAC CTAAAGTTTC
  Y
  CTGATTCACA CTTCCATTAG CAATGGCTTC TTCTTCTTCT TCTTCTTCTT CTTTTTTTTT
  TTTTTTTTTT TTTTTTGTTT TTTTGAGACA GGGTTCCTCT GTATAGCCCC GGCTGTCCTG
  GAACTCACTC TGTAGACCAG GCTGGCCTTG AACTCAGAGG TCCACCTGCC TCTGCCTCCC
  AAGTGCTGGG ATTAAAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52226323	NES15327716	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss323499641	CHEV_10_117243765	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52645806					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226323	NES15327716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117642614 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	1214 bp distal
Rr218194	regulatory region 218194	1187 bp proximal
Rr218195	regulatory region 218195	1786 bp proximal
Rr221673	regulatory region 221673	234 bp distal
Rr225990	regulatory region 225990	1614 bp distal
Rr385360	regulatory region 385360	within coordinates
Rr402273	regulatory region 402273	1372 bp upstream