rs52647221 SNP Detail

Summary

• ID
  rs52647221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:110488970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAACAAA GCTCAGTAAA
  AATTTACCTG GCAGAAGTAG CAGTCAGCTG GGTACCTGGC AAAGTAGTTC AGAGCATCCT
  AAAAAAAGGC AGTGAGTAGA GACTCATTAT AAACATAGTA TTTATCCACT GTCTTTTCTT
  TGTGTAAAAA ATACACATTC AGGATTTGTC TCCTTGTCTC TCCCTCCTTC CCTTCCTCTC
  Y
  CATCTCTCCC TCCTGCTCTC TCTGTCTCTC TCTCTGACTC TCTCTCTCTT TCTCTCTCTC
  TTTCTCTCTC TCTCCTTTCC TTCTTTGCTT ACAGTTCCTC TCCTTACCTC ACAGCTGCCC
  AGTGTAATAA CACATACACA AACACACACA GAAAACATTC AACAAAAATT CATTAGATAG
  ATTTAGAAAT AGTAAATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324525188	CHEV_13_111142644	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52647221					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:110488970 () rs orientation: forward

Symbol	Name	Function Class
Gapt	Grb2-binding adaptor, transmembrane	180 bp downstream