rs52647307 SNP Detail

Summary

• ID
  rs52647307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185247063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAACCAAA CCAAAACACA AACCAAATTT AAAAAAAAAC
  AGACAAAAAA CCAAAACCAC AAAACAAAAC AAAACAAAAC AAAACCCAAC CCATAAAATA
  R
  TTCAAAGGCC GGTTTTACTT TATTGAGATT TGGTGACTTT GACATTGCTA TGGTTTGAAT
  GTGTAATGTC CTCCGTGGGC TCCGGTGTCT GCACACTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146434988	ENSMUSSNP4552287	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320176795	CHEV_1_187338745	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52647307					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185247063 () rs orientation: forward

Symbol	Name	Function Class
Rr425406	regulatory region 425406	73 bp proximal