rs52647781 SNP Detail

Summary

• ID
  rs52647781
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67184148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TCTTTTTCCC ATCTCTCTCC
  T
  TTTTCTCCTT TCTCTGTCTT TTTTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144537652	ENSMUSSNP6124831	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319761794	CHEV_1_67191563	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52647781					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67184148 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	548 bp distal
Rr34361	regulatory region 34361	149 bp distal
Tssr7193	transcription start site region 7193	181 bp downstream
Tssr7194	transcription start site region 7194	154 bp downstream
Tssr7195	transcription start site region 7195	101 bp downstream
Tssr7196	transcription start site region 7196	62 bp downstream
Tssr7197	transcription start site region 7197	4 bp upstream