rs52648230 SNP Detail

Summary

• ID
  rs52648230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:16861220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCG CGGGACAGCA TGAGTCAGCA
  R
  CGGACGGCGC GGAGACAGCC CAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137196024	ENSMUSSNP4201777	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323920177	CHEV_12_16818025	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52648230					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16861220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4441	CpG island 4441			within coordinates
E2f6	E2F transcription factor 6			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr463370	regulatory region 463370			232 bp distal
Rr463371	regulatory region 463371			within coordinates
Tssr112858	transcription start site region 112858			241 bp downstream
Tssr112859	transcription start site region 112859			229 bp downstream
Tssr112860	transcription start site region 112860			1172 bp upstream