rs52648240 SNP Detail

Summary

• ID
  rs52648240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113395970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGCTTGCTC AGCTACGTTT CTTTTTCCCC TTATCTATCT
  ATCTTTCTAT CTGTCTGTCT GTCTGTCTGT CTGTCTGTCT GTCTGTCTGT CTGTCTATCT
  R
  TCTATCTAAT CTATCCATTC ATTTGTTCAC TTAACATCAT TCCAGTTACA GCTGTCTCCT
  TTCTCTCCTC CCAGTCCCAG CCTCACAAGT CCCTCCAACC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss138742498	ENSMUSSNP5301315	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52648240					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113395970 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1812 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Tssr118018	transcription start site region 118018	1965 bp upstream
Tssr118019	transcription start site region 118019	1909 bp upstream
Tssr118020	transcription start site region 118020	1864 bp upstream
Tssr118021	transcription start site region 118021	1747 bp upstream
Tssr118022	transcription start site region 118022	1718 bp upstream
Tssr118023	transcription start site region 118023	1555 bp upstream