rs52648650 SNP Detail

Summary

• ID
  rs52648650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67184202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TGTCTCCCTT TTTTGTCTTT
  Y
  TCACACTGAC ATTCTCTCTC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144537662	ENSMUSSNP2853147	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319761795	CHEV_1_67191617	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52648650					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67184202 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	602 bp distal
Rr34361	regulatory region 34361	203 bp distal
Tssr7193	transcription start site region 7193	235 bp downstream
Tssr7194	transcription start site region 7194	208 bp downstream
Tssr7195	transcription start site region 7195	155 bp downstream
Tssr7196	transcription start site region 7196	116 bp downstream
Tssr7197	transcription start site region 7197	45 bp downstream