rs52649026 SNP Detail

Summary

• ID
  rs52649026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135639427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATG CCCGTGCGTG TGTGTGCGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145543600	ENSMUSSNP2946487	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319992577	CHEV_1_137608266	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52649026					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135639427 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	551 bp downstream
Rr419242	regulatory region 419242	136 bp distal
Tssr8966	transcription start site region 8966	294 bp downstream