rs52649305 SNP Detail

Summary

• ID
  rs52649305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19488341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTG TTCCATTCTC
  W
  TTAAGGCAGA GTCAAGGGCT TATAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52626797	NES15515669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	A	A	T	A		T	A	T	T		T
ss324277953	CHEV_13_19396040	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52649305					SNP	T	T	T	T	T	A	A	A	T	A	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626797	NES15515669	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19488341 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	889 bp downstream
Tssr118532	transcription start site region 118532	952 bp upstream
Tssr121559	transcription start site region 121559	207 bp downstream
Tssr121560	transcription start site region 121560	266 bp downstream
Tssr121561	transcription start site region 121561	817 bp downstream
Tssr121562	transcription start site region 121562	1990 bp downstream