rs52650001 SNP Detail

Summary

• ID
  rs52650001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33150927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTATCC TGACCCTACC
  CAAACAGGAC TGCTGGCATC CTGAGGATTG GAGACTAAAC TCACCCCAAG GAACTACTTC
  TAAACAGCAT ACAGCAGAGC CCCAAGGCTT CTTCTGGATC AACCTGCCAT TGCTGCTTCA
  TGAATGGTGT TTGGAGTGGA TTGAGCTGCT GCTGCTGAGT GTGACCTGAG CTGCTGATAT
  M
  CTGACAATGC AGATTGTTAA ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATCA TCTACCTACC CATCCACCCA TCCTTCCATC CATTCATTCA
  TCATCCATCC ATCATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTCTCTATC
  TAGATATCTT TCTTCCTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137582058	ENSMUSSNP6749095	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52650001					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33150927 () rs orientation: forward

Symbol	Name	Function Class
Gm59430	predicted gene, 59430	1785 bp upstream
Rr464869	regulatory region 464869	1295 bp proximal
Rr464870	regulatory region 464870	1796 bp proximal