rs52651725 SNP Detail

Summary

• ID
  rs52651725
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34793309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTCTGTGTGT ATGTGTCAAG TGAGGAGGAA AAATACAATA
  TCAGGATGGA GGAGACAGGC AAATCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  C
  TCTCTCTCTG TGTGTGTGTG TCTGTCTGTC TGTCTGTCTG TCTTTCATTG GGATTGCTTA
  CAGGATCATG GGTACAGGGT TATAAGTACC TTGCTAGTGA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148896882	ENSMUSSNP2484119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52651725					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34793309 () rs orientation: forward

Symbol	Name	Function Class
Arhgef4	Rho guanine nucleotide exchange factor 4	within coordinates
Gm32790	predicted gene, 32790	within coordinates
Gm37224	predicted gene, 37224	1306 bp downstream
Gm37845	predicted gene, 37845	751 bp downstream