rs52652695 SNP Detail

Summary

• ID
  rs52652695
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77352499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTAAACCCCT TCTGAGAAAC AAGCCTATAG ACACCCACAT
  GCTCATGGGT GCGCACTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  T
  CACACACACA CACACACACA CACACACACA CACACACACA CACACACTGG TCTCTGGAAA
  ACTGCACTAC TGAGTCTATG TGCTGCCTGA AACTGGCCTC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132447447	ENSMUSSNP6351147	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52652695					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77352499 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	738 bp upstream
Cpgi3305	CpG island 3305	357 bp proximal
Rr247229	regulatory region 247229	101 bp proximal
Ssh2	slingshot protein phosphatase 2	1453 bp downstream
Tssr103136	transcription start site region 103136	652 bp upstream
Tssr103137	transcription start site region 103137	753 bp upstream
Tssr103138	transcription start site region 103138	885 bp upstream
Tssr103139	transcription start site region 103139	894 bp upstream
Tssr103140	transcription start site region 103140	932 bp upstream