rs52653670 SNP Detail

Summary

• ID
  rs52653670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170786627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGT GATTTTTTAA AATTATTATT
  R
  TTTATTTTAT TTGTGTGTGT CATAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146148910	ENSMUSSNP2184231	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320114983	CHEV_1_172889189	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52653670					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170786627 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Gm70986	predicted gene, 70986	742 bp upstream
Rr20517	regulatory region 20517	27 bp distal
Rr20518	regulatory region 20518	374 bp proximal
Rr20519	regulatory region 20519	773 bp proximal
Tssr284	transcription start site region 284	836 bp downstream
Tssr14949	transcription start site region 14949	141 bp upstream
Tssr14950	transcription start site region 14950	681 bp downstream
Tssr14951	transcription start site region 14951	759 bp downstream
Tssr14952	transcription start site region 14952	1016 bp downstream
Tssr14953	transcription start site region 14953	1031 bp downstream
Tssr14954	transcription start site region 14954	1798 bp downstream