rs52653951 SNP Detail

Summary

• ID
  rs52653951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45606065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTTAAA ATAGCTCAGA
  TTACATTGTA GATCTATTTG TTATCTCCTT TTCTCAGGGG GCTCAGGGAA ATATGGCAGA
  GAAGGGCATG TGTATATATC AGTAGGGAAA GCAGAAACTT TGGCCAGATT TCAACCATCT
  GTAGGAAAGA AATATAGCAC AGAAATGAAG ATTAAAAAGA ACTATTTTAT TATTATTGCC
  R
  TTGTTGTTTT GTTATTATTG TGCTTATGCA TGCATGGTTG CGTGTATGTA TATGTGTGTG
  TGTGCATGTG TATGTGTGTT TATGTGTGAG TTTATGTGTG TGAGTGTGTG AGTTTATGTG
  TGTGTATATG CATGTGTATG CCTGTGAGTG TGTATGTGTC TATGTGTGTG CATGTGTATG
  TGTGTGTGTG TGTGTGTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss52410611	NES15387182	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs52653951					SNP	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52410611	NES15387182	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:45606065 () rs orientation: forward

Symbol	Name	Function Class
Rr267454	regulatory region 267454	1137 bp proximal