rs52654222 SNP Detail

Summary

• ID
  rs52654222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44741625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTACTGT ACATAAGTGG
  ATCTGCTCAA CAGTTAAATG GATACCTTTA CTGTGAAGTG AGGGAAAGCT GCTAACTGAT
  CAGGGCTCCC CCCCCCCCCC ACACTTTTAA GGGAAAATGT TAAACATGAT GTTCTTCAAT
  GGAAACTTTT TAAAAATTAT TATACTTATA AATTATATGC TTCTTATAAA CCTTATATAA
  R
  TCTACTATAA ACCTCATGTT AAACTTTCTA TGAGCCATAT AAACTTGGCA TAAAAATAAA
  TCCCGGGGAG GGGGGGATGG CTCAGATGGT AAATGCTTAC ACAGCAAGTA TAAGGATCTG
  AATTCAGATC CCCAGAACCC TCATAAAATC TAGGCAATAG TGTAACACAA ATCTTTAACA
  CAAGCACTGA GGGGCAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52263090	NES15307319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52654222					SNP	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52263090	NES15307319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44741625 () rs orientation: forward

Symbol	Name	Function Class
Gm47398	predicted gene, 47398	within coordinates
Gm66625	predicted gene, 66625	1384 bp upstream
Rr431017	regulatory region 431017	542 bp distal
Tssr97520	transcription start site region 97520	1265 bp downstream