rs52654458 SNP Detail

Summary

• ID
  rs52654458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94070076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCATGC ATGCCATTTT
  CACCCATCAC CCAACTCACA CCTTAAAGTT TAAGGGCCAG GGTAACAGAT GACTTCTTTA
  AGAACAATCT AATATTGTAA GACTTGGGTG TTCTCATTTT CTCTCTTTCT GTTTCTGTCT
  GTCTGTCTGT CTGTCTGTCT GTCTGTCTGT CTGTCTCTGT CTCTGTCTCT GTCTCTGTCT
  Y
  TGTCTCTCTC TCCCATCTTT TAAAAGAGTC AAGCAACCAC TCTCACATAC CTGGGGAGAC
  AGTCCTACCC AGGTGCCTGG AGCAGCGAAT TCTGGCGCTG TAGGGCTCTG TCTTCTGGAA
  GGTGCTCCCT GGGCAGCAGG AAACCAAAGC ATGAACTATA ACATGGGGAA AAAATGCAGG
  AGGGAGGGAC CATCCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323812226	CHEV_11_94040564	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52654458					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94070076 () rs orientation: forward

Symbol	Name	Function Class
Tssr110134	transcription start site region 110134	1069 bp downstream