rs52654502 SNP Detail

Summary

• ID
  rs52654502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:58397176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTGCTC TTCCAGAGGT
  TCTGAGTTCA ATTCTTAGCA CCCACATCGT GGCTCACAAC CATCAATAGT GGGATCCAAT
  GCCCTCTTCT GGTGTGTCTG AAGACAGCTA TAGTGTACTC ATATATATAA AATAAACAAA
  TCTTTAAAAA AAGATATAAA TACTAATATT GTTTAAATTC ATAAAAGTAT GTGGTTATTA
  Y
  AACCAAATAC GGCAATGTAT ACTATTGTAC TATTTAATAA TAATTATAAT AATATGTAAA
  TAATAATACT ACTATTTAAT AATAATTAAT ATCATTACTT TTCCTTTTTT AGTATAAAAA
  ACAAAATTGA GTTATTATTA TTATTATTAT TATTATTTTG GTTTTTGAGA CAGGGTTTTT
  CAGTGTAGCC TTGGCTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52339439	NES15292211	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52654502					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52339439	NES15292211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:58397176 () rs orientation: forward

Symbol	Name	Function Class
Ccdc138	coiled-coil domain containing 138	within coordinates
Rr215295	regulatory region 215295	976 bp distal
Rr227981	regulatory region 227981	1953 bp distal
Rr227982	regulatory region 227982	976 bp distal