rs52657052 SNP Detail

Summary

• ID
  rs52657052
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:101436114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC TTGGGGCTTT GTAAGTCCTG
  G
  AGGCGGGAAG GGGACTGACA GGAGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324798515	CHEV_14_101597895	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52657052					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss146736118	ENSMUSSNP2032033	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:101436114 () rs orientation: forward

Symbol	Name	Function Class
Prr30	proline rich 30	within coordinates
Tssr126900	transcription start site region 126900	317 bp upstream
Tssr130022	transcription start site region 130022	230 bp downstream
Tssr130023	transcription start site region 130023	272 bp downstream
Tssr130024	transcription start site region 130024	386 bp downstream
Tssr130025	transcription start site region 130025	1636 bp downstream
Tssr130026	transcription start site region 130026	1671 bp downstream