rs52661578 SNP Detail

Summary

• ID
  rs52661578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84355435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGCTTT ATGCTTCCTT
  CTTGTAAGCA ACCTCATTCC TTCATAGTGT AGAAATGAAA AATGTGCACT ATAACCTCAT
  CAGATTTCTT ACAGGAACCC AGGTTACGGC AGAGAGCCGC AGTGCCAGTC TCTAGGCTGT
  CTGCGGGGCG GCGTGGTGAG GGCTGTCTGC GGGGCGGCGT GGTGAGGGCT GTCTGCGGGG
  Y
  GGCGTGGTGA GGGCTGTCTG CGGGGCGCCG TGGTGAGTTG CAGGCTGTGC CCTGACTTTG
  TCAGCTCTTA CTAAATCACG TCTAAGGATA AAGAGGACAG CATTGCCTGT TGATGAGCCC
  AGTTCTTCAT TCTGCTTTTC CTACAGTGCA CTGAACAGCA GAGTAGATGG TTTACATCGC
  AAATACATAG TTACAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148458148	ENSMUSSNP1027119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52661578					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84355435 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	within coordinates
Rr404934	regulatory region 404934	1110 bp upstream
Rr518505	regulatory region 518505	194 bp distal
Rr518506	regulatory region 518506	within coordinates
Rr518507	regulatory region 518507	1098 bp proximal
Rr518508	regulatory region 518508	1229 bp proximal
Tssr139145	transcription start site region 139145	1379 bp downstream