rs52671410 SNP Detail

Summary

• ID
  rs52671410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12826710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCTCCA ATGCCAAGCG
  TGGTGTTTGT ACTCAATACT GTGAGTAGCC TGTGGTACCA GCAGTAGCTC TTTGAGTCCC
  AAGTTTAATC ATGAGAGTAT TGGATTGAGG AGCAACCATT TATCTTATTA TTTGGTAGCT
  GTTTTTTATT GGGCCTTGGC TGTCCTGGAA TTTTAGTTCT GTAGACCAGG CTGCCTGCTT
  R
  TTTCTGCCTC TGCAGTGTTG GGATAGCCCA ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAAAGC ACTTTGTGGA AGTTCATTTG
  TGTTTACAAT GTTCTGTGGG AAGAACTGAG AACAAAGTAA AGAATGAAGA ATGGTCACTG
  TTGGTTAGTC AGGTTGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393066414	MGP_WTSI_15_12756379	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A	A	A	A	G	G	G	G	A	A	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52671410					SNP	A	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A	A	A	A	G	G	G	G	A	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393066414	MGP_WTSI_15_12756379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12826710 () rs orientation: forward

Symbol	Name	Function Class
6030458C11Rik	RIKEN cDNA 6030458C11 gene	1975 bp upstream
Cpgi6961	CpG island 6961	1268 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	within coordinates
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	109 bp distal
Rr369910	regulatory region 369910	1719 bp downstream
Rr369911	regulatory region 369911	1483 bp downstream
Tssr130744	transcription start site region 130744	1791 bp downstream
Tssr130745	transcription start site region 130745	1741 bp downstream
Tssr130746	transcription start site region 130746	1717 bp downstream
Tssr133798	transcription start site region 133798	1970 bp upstream
Tssr133799	transcription start site region 133799	1949 bp upstream