rs52679332 SNP Detail

Summary

• ID
  rs52679332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30239866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTAAGT TGTCAGTTGC
  CTGTGTTTTC TTTCATCCAT GTCTACAGCC CTCATGGCTA TACTTGGTAA AACCAAACAT
  GGCACAACAA TGAAATGCAT TGGCTCAAAC AAATCTATTC CAGGACTTTA AAAAATTATT
  TATTTATTTA TTTATTTATT TATTTAATAT CTTGATCACA GCTTCCCCTC CCTCCTCTCC
  Y
  CCAAGTCCCT CTCACCTCCC CTCCCCCATA TATCTCAGGA CTTTAAAGAA AGTTATTTAT
  TAGATGATTA TAAAGTAAGG GGATTTAAAA GAACATCAAA AATGATACAG CGTATCTCTT
  TTTTTAGGTG CAGAGACTTT CTTTTTGGGG CTTCCCTTCT TTGTTTTAAT TTTAATTTAT
  GTGATTTTTT TTCTCAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147400360	ENSMUSSNP3956792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52679332					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30239866 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	97 bp distal