rs52680798 SNP Detail

Summary

• ID
  rs52680798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106094935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGTGAACTG ACTCCTATAA ATTGTCCTCT GACCTCCACA
  CACTTTTCAT TTCACACAGG TGTCCACACA TATATAACAT GCATGCTCGC GTGCGCGCGC
  R
  CGCGCGCGCG CGCACACACA CACACACACA CACTAAACAA ACAAACAAAC AAACAAACAT
  AATATGATTG TTGTAACTTT AAGGCCAAAC ATAGTGAGTT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146767824	ENSMUSSNP2479118	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52680798					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106094935 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	136 bp downstream
Rr294089	regulatory region 294089	1374 bp proximal
Rr390111	regulatory region 390111	715 bp upstream
Tssr130160	transcription start site region 130160	1679 bp downstream