rs52687594 SNP Detail

Summary

• ID
  rs52687594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTGTTTGAAA AGGCCCAGAG AAAAATGTGC TACTGTCAAA
  AGCAGCCTGA GTGATGCGCA GTGGGTGGTG CACTGCAGGT GGTACTCTGC AGGTGATACA
  Y
  TGCAGGTGGT GCACTGCAGG TGGCACTCTG CAGGTGATAC ATTGCAGGTG GTGCTCTGCA
  GGTGATACTC CACAGACAGC TTTCTACTCC CTGTGCTTTG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147562956	ENSMUSSNP455822	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52687594					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877318 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	944 bp upstream
Tssr133983	transcription start site region 133983	831 bp upstream
Tssr133984	transcription start site region 133984	1650 bp downstream