rs52692226 SNP Detail

Summary

• ID
  rs52692226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:39295845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAAGCAC TGCTTTCCTT
  GTGTCCCTTA CGTTTGGGTC TGCTGTGTCA TCATTTTCAT TGAATTCCAG GAAATCATTA
  ATTTCTTTCT TTCTTTATTC CCTGACCAAG TTATCATTGA GTAGAGAGAT GTTCTGTTTT
  CATGGGTTTG TGGGTTTTCT GTTGTTTTTG TTGTTATTGG TGGCTAGAAT TTTCTGTGAT
  R
  ATCTAATAGG ATGCATGGGA TTATTTCAAT CTTCTTGTAT CGGTTGAGGC TTGTTTTGTG
  ACTGATTATA TGGTAAACTT TGGAAAAGGT AGCATGAGGT GCTGAGAAGA AGGTGTATTC
  CTTTTTTTTT TTTTTGGAAA TATTCTGTAG ATATCTGTTA AATCCATTTG GTTCATAAGC
  TCTATTAGTT TCACTGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147663711	ENSMUSSNP6366308	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52692226					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39295845 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	Intron
Tssr131153	transcription start site region 131153	1848 bp upstream
Tssr131154	transcription start site region 131154	1874 bp upstream
Tssr131155	transcription start site region 131155	1902 bp upstream