rs52692238 SNP Detail

Summary

• ID
  rs52692238
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39296837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCAGATGCAG GGCTATGTAG AGAGAGCCTA ACCCCAAAAC
  AAAACAAAAA CCGAAGAGGA AATAGACACA TACATACAAA CATACATACA TACAGAGAGA
  S
  AGAGAGAGAG AGGGAGAGAG AGAGAGAGAG AGTGAGAGAG AGAGAACCAC TCTGTTGCCT
  CTACTCCCCA CAATGCTTCT AAGACCTAAC CAAATTGCAG A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147663799	ENSMUSSNP5667403	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52692238					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39296837 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	within coordinates
Tssr131153	transcription start site region 131153	856 bp upstream
Tssr131154	transcription start site region 131154	882 bp upstream
Tssr131155	transcription start site region 131155	910 bp upstream
Tssr131156	transcription start site region 131156	1126 bp upstream